Variant report
| Variant | rs17103322 |
|---|---|
| Chromosome Location | chr1:47959147-47959148 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000221346 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11585530 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11588699 | 0.92[ASN][1000 genomes] |
| rs11590531 | 0.85[ASN][1000 genomes] |
| rs12065137 | 1.00[CHB][hapmap] |
| rs17103342 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs2102437 | 0.92[ASN][1000 genomes] |
| rs28493519 | 1.00[ASN][1000 genomes] |
| rs471608 | 1.00[ASN][1000 genomes] |
| rs56404532 | 1.00[ASN][1000 genomes] |
| rs578335 | 1.00[ASN][1000 genomes] |
| rs59865928 | 1.00[ASN][1000 genomes] |
| rs60503680 | 0.92[ASN][1000 genomes] |
| rs61668872 | 0.89[AFR][1000 genomes] |
| rs635710 | 1.00[ASN][1000 genomes] |
| rs6688849 | 1.00[ASN][1000 genomes] |
| rs6691723 | 1.00[CHB][hapmap] |
| rs72904553 | 1.00[ASN][1000 genomes] |
| rs72904554 | 1.00[ASN][1000 genomes] |
| rs7531586 | 0.92[ASN][1000 genomes] |
| rs7543243 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001779 | chr1:47884229-48111485 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv871299 | chr1:47889417-48057890 | Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | esv2755190 | chr1:47907580-48048680 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
