Variant report

Variant	rs17104481
Chromosome Location	chr14:36909759-36909760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10142468	1.00[EUR][1000 genomes]
rs10147415	1.00[EUR][1000 genomes]
rs10147582	1.00[EUR][1000 genomes]
rs10483471	1.00[EUR][1000 genomes]
rs1107311	1.00[EUR][1000 genomes]
rs17104555	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1885123	1.00[EUR][1000 genomes]
rs4901840	1.00[EUR][1000 genomes]
rs4902189	1.00[EUR][1000 genomes]
rs4902461	1.00[EUR][1000 genomes]
rs7144163	1.00[EUR][1000 genomes]
rs8004409	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv832771	chr14:36771007-36964041	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36907200-36912200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:36908000-36911600	Bivalent Enhancer	Brain Germinal Matrix	brain
3	chr14:36908800-36909800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:36908800-36910800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:36908800-36912400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr14:36909000-36910400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr14:36909000-36913600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr14:36909200-36910000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:36909200-36912600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:36909400-36910400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:36909600-36910200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:36909600-36912600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:36909600-36912600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr14:36909600-36913000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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