Variant report

Variant	rs17104534
Chromosome Location	chr14:68113738-68113739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68111577..68114735-chr14:68140017..68142397,5	MCF-7	breast:
2	chr14:68085426..68087639-chr14:68113722..68116583,2	K562	blood:

Variant related genes	Relation type
ENSG00000100568	Chromatin interaction
ENSG00000081181	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10483800	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17104575	1.00[YRI][hapmap]
rs17104654	1.00[YRI][hapmap]
rs2234516	1.00[YRI][hapmap]
rs73272376	0.81[AFR][1000 genomes]
rs73272386	0.87[AFR][1000 genomes]
rs73274519	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68088800-68123000	Weak transcription	Fetal Brain Male	brain
2	chr14:68089600-68116200	Weak transcription	Fetal Kidney	kidney
3	chr14:68090000-68114800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:68090000-68115800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:68091800-68116600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:68100600-68114600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68101600-68114200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:68106000-68114800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:68107600-68115400	Weak transcription	NHLF	lung
10	chr14:68108600-68115600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:68109000-68130000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:68109000-68133200	Weak transcription	Stomach Mucosa	stomach
13	chr14:68109200-68115800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:68109400-68116800	Strong transcription	NHEK	skin
15	chr14:68109800-68115200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:68109800-68124400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:68109800-68126000	Strong transcription	Fetal Brain Female	brain
18	chr14:68110400-68115600	Weak transcription	Gastric	stomach
19	chr14:68110800-68115800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:68110800-68115800	Weak transcription	Small Intestine	intestine
21	chr14:68110800-68116600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr14:68111000-68114800	Weak transcription	HMEC	breast
23	chr14:68111000-68115000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:68111000-68115600	Weak transcription	Fetal Stomach	stomach
25	chr14:68111000-68126800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:68111000-68135200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr14:68111200-68114400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:68111200-68115600	Weak transcription	Colonic Mucosa	Colon
29	chr14:68111400-68114800	Weak transcription	Hela-S3	cervix
30	chr14:68111400-68115200	Weak transcription	Right Ventricle	heart
31	chr14:68111400-68119000	Strong transcription	K562	blood
32	chr14:68111600-68115800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr14:68111600-68116200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:68111800-68115400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:68111800-68117000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:68111800-68126000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:68112000-68114400	Weak transcription	Colon Smooth Muscle	Colon
38	chr14:68112000-68117000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:68112000-68124200	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr14:68112000-68124400	Strong transcription	Brain Germinal Matrix	brain
41	chr14:68112000-68129400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:68112000-68129800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr14:68112200-68113800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr14:68112200-68116800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:68112200-68116800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:68112200-68116800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:68112200-68117400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:68112200-68120400	Strong transcription	Adipose Nuclei	Adipose
49	chr14:68112200-68121200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr14:68112200-68125000	Strong transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links