Variant report

Variant	rs17104682
Chromosome Location	chr12:68427036-68427037
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10878723	0.81[ASW][hapmap];0.95[CEU][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10878726	0.98[ASN][1000 genomes]
rs11177002	0.95[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11177008	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12228471	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12582272	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1468487	0.87[EUR][1000 genomes]
rs2051993	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2860609	0.87[EUR][1000 genomes]
rs2870960	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2906854	0.87[EUR][1000 genomes]
rs2906859	0.95[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs3015001	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs56393928	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61923060	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7306466	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7952790	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7962511	0.81[ASW][hapmap];0.95[CEU][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17104682	IFNG-AS1	cis	Muscle Skeletal	GTEx
rs17104682	IFNG-AS1	cis	Whole Blood	GTEx
rs17104682	IFNG-AS1	cis	Artery Tibial	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68422600-68449000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:68423200-68429400	Weak transcription	Primary B cells from cord blood	blood
3	chr12:68426000-68431800	Weak transcription	K562	blood
4	chr12:68426200-68430600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr12:68426200-68434400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr12:68426400-68427800	Weak transcription	Fetal Thymus	thymus
7	chr12:68426400-68428400	Weak transcription	GM12878-XiMat	blood
8	chr12:68426400-68430000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:68426800-68434600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr12:68426800-68436200	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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