Variant report
Variant | rs17104780 |
---|---|
Chromosome Location | chr14:37058523-37058524 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:37053930..37056415-chr14:37057863..37059369,2 | MCF-7 | breast: | |
2 | chr14:37055658..37057192-chr14:37058194..37060437,2 | MCF-7 | breast: | |
3 | chr14:37054360..37056420-chr14:37058461..37060514,2 | K562 | blood: | |
4 | chr14:37051398..37053475-chr14:37057013..37059007,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000136327 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1005343 | 1.00[ASN][1000 genomes] |
rs1005354 | 1.00[ASN][1000 genomes] |
rs1005355 | 1.00[ASN][1000 genomes] |
rs10143437 | 1.00[ASN][1000 genomes] |
rs10431615 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
rs10483474 | 1.00[CHB][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs11624322 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs1535340 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
rs1535341 | 1.00[ASN][1000 genomes] |
rs1535342 | 1.00[ASN][1000 genomes] |
rs17104778 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs17104802 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs17104834 | 0.87[AMR][1000 genomes] |
rs177322 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs177325 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1956966 | 1.00[ASN][1000 genomes] |
rs2057328 | 1.00[CHB][hapmap] |
rs73253957 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs735599 | 1.00[ASN][1000 genomes] |
rs735708 | 1.00[ASN][1000 genomes] |
rs8004831 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
rs8016238 | 1.00[CHB][hapmap] |
rs927285 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs986876 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040256 | chr14:36501452-37172046 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
2 | nsv542040 | chr14:36501452-37172046 | Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
3 | nsv1047290 | chr14:36564568-37445157 | Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 43 gene(s) | inside rSNPs | diseases |
4 | nsv1037952 | chr14:36670484-37294692 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
5 | nsv542042 | chr14:36670484-37294692 | Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
6 | nsv1053685 | chr14:36915643-37245920 | Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
7 | nsv917279 | chr14:36953511-37146655 | Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
8 | nsv949612 | chr14:36996206-37121633 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:37058400-37059800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |