Variant report

Variant	rs17105034
Chromosome Location	chr14:37153862-37153863
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11156926	0.90[JPT][hapmap]
rs12432569	0.93[ASN][1000 genomes]
rs12436157	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17104939	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17104965	1.00[ASW][hapmap];0.80[CHD][hapmap];0.80[JPT][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17105005	1.00[ASW][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17105030	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37132200-37155200	Weak transcription	K562	blood
2	chr14:37137200-37154200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:37145800-37157600	Weak transcription	Esophagus	oesophagus
4	chr14:37151000-37154800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:37152800-37154200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:37153600-37154400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:37153600-37154600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:37153600-37154800	Enhancers	Dnd41	blood
9	chr14:37153600-37155000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:37153600-37155000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:37153600-37155600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:37153800-37154400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr14:37153800-37154600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr14:37153800-37154600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:37153800-37154800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:37153800-37155200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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