Variant report

Variant	rs17105554
Chromosome Location	chr14:68874908-68874909
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr14:68874859-68875940	GM12878	blood:	n/a	chr14:68875131-68875148

No.	Distal block	Cell Line	Cell type
1	chr14:68874787..68877042-chr14:69256947..69261262,5	MCF-7	breast:
2	chr14:68869686..68872632-chr14:68873283..68875194,2	MCF-7	breast:
3	chr14:68773440..68776404-chr14:68870771..68875059,3	MCF-7	breast:
4	chr14:68874422..68876560-chr14:68917210..68919042,2	MCF-7	breast:

Variant related genes	Relation type
RAD51B	TF binding region
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12717531	0.87[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68863600-68877200	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:68864800-68878000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:68865000-68877000	Weak transcription	Pancreas	Pancrea
4	chr14:68867200-68875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:68867200-68876200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:68867200-68876400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:68867200-68886400	Weak transcription	Dnd41	blood
8	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:68868400-68876000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:68870600-68875600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:68870800-68876000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:68870800-68877400	Enhancers	Primary B cells from cord blood	blood
13	chr14:68871200-68875600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:68871600-68876000	Weak transcription	Adipose Nuclei	Adipose
15	chr14:68871800-68875200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:68871800-68875600	Weak transcription	Fetal Muscle Leg	muscle
17	chr14:68871800-68875800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:68871800-68876000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:68871800-68876000	Weak transcription	Fetal Heart	heart
20	chr14:68871800-68876200	Weak transcription	Ovary	ovary
21	chr14:68871800-68876200	Weak transcription	Spleen	Spleen
22	chr14:68871800-68879000	Weak transcription	NH-A	brain
23	chr14:68871800-68880800	Weak transcription	Fetal Lung	lung
24	chr14:68872000-68875000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr14:68872200-68875000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:68872200-68875600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr14:68872200-68876200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:68872200-68877000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr14:68872200-68877200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:68872200-68883400	Weak transcription	Esophagus	oesophagus
31	chr14:68872600-68875000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:68872800-68879400	Weak transcription	HUVEC	blood vessel
33	chr14:68873000-68875200	Weak transcription	Osteobl	bone
34	chr14:68873200-68875000	Weak transcription	NHDF-Ad	bronchial
35	chr14:68873200-68875200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr14:68873200-68876800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:68873400-68875000	Weak transcription	NHLF	lung
38	chr14:68873400-68875200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:68873400-68876000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr14:68873400-68878800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:68873400-68878800	Weak transcription	NHEK	skin
42	chr14:68873400-68883800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr14:68873600-68875400	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr14:68874200-68875200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr14:68874200-68875400	Enhancers	Fetal Intestine Small	intestine
46	chr14:68874200-68875400	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr14:68874200-68876400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr14:68874200-68876600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr14:68874200-68876600	Enhancers	GM12878-XiMat	blood
50	chr14:68874200-68879200	Enhancers	A549	lung

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