Variant report

Variant	rs17105749
Chromosome Location	chr14:77858089-77858090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77852353..77854964-chr14:77856109..77858623,2	MCF-7	breast:
2	chr14:77651269..77652877-chr14:77857403..77859042,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10141317	0.94[EUR][1000 genomes]
rs10143629	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149037	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs11159261	1.00[JPT][hapmap]
rs11539461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11624314	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11844300	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12432582	0.91[ASN][1000 genomes]
rs12433120	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12433521	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12434419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435136	1.00[JPT][hapmap]
rs12435676	0.86[ASN][1000 genomes]
rs13379432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751406	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17751412	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17824034	1.00[JPT][hapmap]
rs17824214	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17824322	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2063997	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28583775	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28590531	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34180883	0.88[ASN][1000 genomes]
rs3742737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs3783985	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4899652	1.00[JPT][hapmap]
rs4903578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4903579	1.00[JPT][hapmap]
rs4903580	1.00[JPT][hapmap]
rs4903581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59010468	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574374	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7149534	0.84[AMR][1000 genomes]
rs7155063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156032	1.00[CHB][hapmap]
rs7156671	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8007503	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8010520	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8012548	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017215	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8020537	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1362	chr14:77853202-77898605	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77844400-77862200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:77856200-77860800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:77856400-77858800	Enhancers	HepG2	liver
4	chr14:77857000-77860000	Weak transcription	Fetal Intestine Small	intestine
5	chr14:77857200-77858800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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