Variant report

Variant	rs17105795
Chromosome Location	chr14:69002283-69002284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69000957..69002671-chr14:69010193..69012853,2	MCF-7	breast:
2	chr14:69001801..69004663-chr14:69006865..69008433,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17105790	1.00[AFR][1000 genomes]
rs17105796	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17105821	0.87[AFR][1000 genomes]
rs17105844	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68996200-69002600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68996200-69007800	Weak transcription	Stomach Mucosa	stomach
3	chr14:69000000-69002400	Enhancers	NHDF-Ad	bronchial
4	chr14:69000000-69003000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:69000800-69002600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr14:69001200-69003600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:69001200-69003600	Enhancers	HMEC	breast
8	chr14:69001800-69003000	Enhancers	Hela-S3	cervix
9	chr14:69001800-69003000	Enhancers	HSMM	muscle
10	chr14:69001800-69003200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:69001800-69003200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:69001800-69003200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr14:69001800-69003400	Enhancers	NHLF	lung
14	chr14:69001800-69003600	Enhancers	NHEK	skin
15	chr14:69002000-69002400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:69002000-69003000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:69002000-69003200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:69002000-69003600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:69002200-69002400	Enhancers	Gastric	stomach
20	chr14:69002200-69002800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:69002200-69002800	Enhancers	Placenta	Placenta
22	chr14:69002200-69002800	Enhancers	A549	lung
23	chr14:69002200-69003000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:69002200-69003000	Enhancers	HSMMtube	muscle
25	chr14:69002200-69003200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:69002200-69003200	Enhancers	Osteobl	bone

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