Variant report

Variant	rs17106719
Chromosome Location	chr14:72542897-72542898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17179567	0.83[EUR][1000 genomes]
rs17768678	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72540800-72543600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:72541600-72543000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:72541600-72543400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:72541800-72550200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:72542400-72543000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:72542400-72543000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:72542400-72543200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:72542400-72543400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr14:72542600-72543000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:72542600-72544600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:72542600-72553400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:72542800-72543600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:72542800-72554800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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