Variant report

Variant	rs17106805
Chromosome Location	chr14:25139874-25139875
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56347548	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66561041	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68146491	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681051	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606914	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901503	chr14:25133186-25172456	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17106805	RNASE6	cis	cerebellum	SCAN
rs17106805	PRMT5	cis	parietal	SCAN
rs17106805	CHD8	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25135200-25141400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:25135200-25142000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:25135400-25140200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:25135400-25140200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:25135400-25140400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:25135400-25141200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:25135400-25141800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr14:25135400-25142200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:25135400-25142600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:25135600-25141000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:25135600-25141000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:25135600-25141200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:25135600-25142200	Weak transcription	NHEK	skin
14	chr14:25139800-25140400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:25139800-25140600	Enhancers	Primary B cells from peripheral blood	blood
16	chr14:25139800-25142000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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