Variant report

Variant	rs17106865
Chromosome Location	chr14:21977923-21977924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr14:21977526-21978143	HEK293-T-REx	kidney:	n/a	n/a
2	MXI1	chr14:21977901-21980034	SK-N-SH	brain:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:21976926..21983845-chr14:21991695..21998209,25	K562	blood:
2	chr14:21927480..21929708-chr14:21977698..21979335,2	K562	blood:
3	chr14:21943182..21946742-chr14:21976824..21981257,10	MCF-7	breast:
4	chr14:21943174..21944974-chr14:21977836..21979361,2	K562	blood:
5	chr14:21924214..21926252-chr14:21977009..21978995,2	K562	blood:
6	chr14:21943699..21946735-chr14:21977733..21982256,4	MCF-7	breast:
7	chr14:21977163..21984004-chr14:21985497..21991656,11	K562	blood:
8	chr14:21923462..21925701-chr14:21977921..21979566,3	MCF-7	breast:
9	chr14:21921735..21926252-chr14:21977495..21980798,4	K562	blood:
10	chr14:21943174..21947446-chr14:21976603..21980796,8	K562	blood:
11	chr14:21953304..21957637-chr14:21977622..21980273,4	K562	blood:

No data

Variant related genes	Relation type
METTL3	TF binding region
ENSG00000100888	Chromatin interaction
ENSG00000257096	Chromatin interaction
ENSG00000129472	Chromatin interaction
ENSG00000165821	Chromatin interaction
ENSG00000092203	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17106411	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1054013	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv541991	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv530011	chr14:21876973-21985341	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv2422459	chr14:21931624-22169502	Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21947000-21978000	Weak transcription	Fetal Heart	heart
2	chr14:21967800-21978600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:21971800-21978000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:21971800-21978000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:21971800-21978200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:21971800-21978200	Weak transcription	Stomach Mucosa	stomach
7	chr14:21972000-21978000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:21972000-21978000	Weak transcription	NHDF-Ad	bronchial
9	chr14:21972000-21978200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:21972000-21978200	Weak transcription	Fetal Kidney	kidney
11	chr14:21972000-21978200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:21972000-21978200	Weak transcription	Right Ventricle	heart
13	chr14:21972000-21978400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:21972000-21978600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:21972000-21978600	Weak transcription	Aorta	Aorta
16	chr14:21972000-21978600	Weak transcription	Esophagus	oesophagus
17	chr14:21972000-21978800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:21972200-21978200	Weak transcription	Colonic Mucosa	Colon
19	chr14:21976000-21978000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr14:21976400-21978000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:21976400-21978000	Weak transcription	HSMMtube	muscle
22	chr14:21976400-21978200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr14:21976400-21978200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:21976400-21978400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:21976400-21978600	Weak transcription	Lung	lung
26	chr14:21976600-21978000	Weak transcription	NHLF	lung
27	chr14:21976800-21978000	Weak transcription	Fetal Intestine Large	intestine
28	chr14:21976800-21978000	Weak transcription	Fetal Lung	lung
29	chr14:21976800-21978200	Weak transcription	Right Atrium	heart
30	chr14:21977000-21978000	Weak transcription	NH-A	brain
31	chr14:21977000-21978200	Enhancers	Fetal Brain Male	brain
32	chr14:21977000-21978400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr14:21977200-21978000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:21977200-21978000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr14:21977200-21978000	Enhancers	Psoas Muscle	Psoas
36	chr14:21977200-21978200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:21977200-21978200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr14:21977200-21978200	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr14:21977200-21978200	Enhancers	Liver	Liver
40	chr14:21977200-21978200	Enhancers	Thymus	Thymus
41	chr14:21977200-21978400	Enhancers	Primary T cells fromperipheralblood	blood
42	chr14:21977400-21978000	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
43	chr14:21977400-21978000	Genic enhancers	Primary B cells from cord blood	blood
44	chr14:21977400-21978000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr14:21977400-21978000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:21977400-21978000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:21977400-21978000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:21977400-21978000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
49	chr14:21977400-21978000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr14:21977400-21978000	Enhancers	Brain Germinal Matrix	brain

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