Variant report

Variant	rs17106980
Chromosome Location	chr11:107329360-107329361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107311896..107313858-chr11:107327138..107329604,2	K562	blood:

Variant related genes	Relation type
ENSG00000152404	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10047417	1.00[AMR][1000 genomes]
rs10047418	1.00[AMR][1000 genomes]
rs10047505	1.00[AMR][1000 genomes]
rs10160611	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10454491	1.00[AMR][1000 genomes]
rs10502089	1.00[AMR][1000 genomes]
rs11212126	1.00[AMR][1000 genomes]
rs11212139	1.00[AMR][1000 genomes]
rs11212140	1.00[AMR][1000 genomes]
rs11212165	1.00[AMR][1000 genomes]
rs11212168	1.00[AMR][1000 genomes]
rs11212170	1.00[AMR][1000 genomes]
rs11212192	1.00[AMR][1000 genomes]
rs11212223	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212235	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212247	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212252	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11500987	1.00[AMR][1000 genomes]
rs12269789	1.00[AMR][1000 genomes]
rs12272489	1.00[AMR][1000 genomes]
rs12272847	1.00[AMR][1000 genomes]
rs12274369	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277490	1.00[AMR][1000 genomes]
rs12277540	1.00[AMR][1000 genomes]
rs12277661	1.00[AMR][1000 genomes]
rs12278176	1.00[AMR][1000 genomes]
rs12284248	1.00[AMR][1000 genomes]
rs12285786	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285847	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287922	0.91[AFR][1000 genomes]
rs12288889	1.00[AMR][1000 genomes]
rs12290608	1.00[AMR][1000 genomes]
rs12293064	1.00[AMR][1000 genomes]
rs12293353	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377393	1.00[AMR][1000 genomes]
rs17106930	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73549860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73549861	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358411	1.00[AMR][1000 genomes]
rs7358412	1.00[AMR][1000 genomes]
rs9888291	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv898375	chr11:107299631-107365191	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898377	chr11:107316499-107354312	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv2757476	chr11:107324276-107344568	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv2759864	chr11:107324276-107344568	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107326800-107329400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:107326800-107329400	Active TSS	GM12878-XiMat	blood
3	chr11:107327400-107329400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:107327600-107329400	Active TSS	Right Atrium	heart
5	chr11:107328000-107329400	Active TSS	Brain Angular Gyrus	brain
6	chr11:107328000-107329400	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr11:107328000-107329400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr11:107328200-107329400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr11:107328200-107329400	Active TSS	Brain Cingulate Gyrus	brain
10	chr11:107328800-107329400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr11:107328800-107329400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr11:107328800-107329400	Flanking Active TSS	Dnd41	blood
13	chr11:107328800-107329400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr11:107329000-107329400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:107329000-107329400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:107329200-107329400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:107329200-107329400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:107329200-107329400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr11:107329200-107329400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:107329200-107329400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:107329200-107329400	Enhancers	Primary B cells from cord blood	blood
22	chr11:107329200-107329400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr11:107329200-107329400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr11:107329200-107329400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr11:107329200-107329400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:107329200-107329400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:107329200-107329400	Enhancers	Adipose Nuclei	Adipose
28	chr11:107329200-107329400	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr11:107329200-107329400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:107329200-107329400	Enhancers	Fetal Kidney	kidney
31	chr11:107329200-107329400	Flanking Active TSS	A549	lung
32	chr11:107329200-107329400	Enhancers	HepG2	liver
33	chr11:107329200-107329400	Enhancers	HUVEC	blood vessel

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