Variant report

Variant	rs17107138
Chromosome Location	chr14:72562283-72562284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10483840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106991	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107204	1.00[ASN][1000 genomes]
rs17107210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107252	1.00[ASN][1000 genomes]
rs17107255	1.00[ASN][1000 genomes]
rs17107267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107306	1.00[ASN][1000 genomes]
rs17107331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107827	0.85[AMR][1000 genomes]
rs17107876	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17108275	1.00[AFR][1000 genomes]
rs17108329	1.00[AFR][1000 genomes]
rs17108479	1.00[AFR][1000 genomes]
rs2109129	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72556800-72563400	Weak transcription	Left Ventricle	heart
2	chr14:72556800-72563400	Weak transcription	Right Atrium	heart
3	chr14:72558400-72563600	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:72560600-72566600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72561200-72564000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:72561400-72562400	Enhancers	Fetal Brain Female	brain
7	chr14:72561400-72562600	Flanking Active TSS	GM12878-XiMat	blood
8	chr14:72561800-72562400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr14:72562000-72563400	Weak transcription	Right Ventricle	heart
10	chr14:72562200-72563200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr14:72562200-72564800	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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