Variant report

Variant	rs17107144
Chromosome Location	chr11:107430268-107430269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107423484..107425068-chr11:107427739..107430641,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs559269	1.00[YRI][hapmap]
rs635944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107370000-107433800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:107372000-107435600	Weak transcription	Colonic Mucosa	Colon
3	chr11:107372800-107434600	Weak transcription	Placenta	Placenta
4	chr11:107376600-107434600	Weak transcription	Lung	lung
5	chr11:107376800-107434600	Weak transcription	Psoas Muscle	Psoas
6	chr11:107377000-107432600	Weak transcription	K562	blood
7	chr11:107378600-107433800	Weak transcription	Fetal Kidney	kidney
8	chr11:107382000-107434200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:107389800-107434600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:107389800-107435600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:107395200-107431800	Weak transcription	A549	lung
12	chr11:107399800-107435600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:107401200-107434200	Weak transcription	Fetal Brain Female	brain
14	chr11:107403000-107434600	Weak transcription	Fetal Thymus	thymus
15	chr11:107406800-107433200	Weak transcription	HSMMtube	muscle
16	chr11:107407200-107434400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:107407800-107433800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:107408000-107434600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:107408200-107435800	Weak transcription	Gastric	stomach
20	chr11:107409600-107434600	Weak transcription	HepG2	liver
21	chr11:107412000-107433600	Weak transcription	Small Intestine	intestine
22	chr11:107416000-107432400	Weak transcription	NHLF	lung
23	chr11:107416200-107433600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:107416200-107433600	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:107416200-107434600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:107416400-107432600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:107416400-107432800	Weak transcription	Hela-S3	cervix
28	chr11:107416400-107433000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:107416600-107431800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:107417200-107432000	Weak transcription	NHEK	skin
31	chr11:107417400-107432400	Weak transcription	HMEC	breast
32	chr11:107417600-107433200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:107417600-107433600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:107419600-107434600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:107421400-107434600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:107421400-107435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:107421600-107434400	Weak transcription	Brain Angular Gyrus	brain
38	chr11:107421600-107434600	Weak transcription	Aorta	Aorta
39	chr11:107421600-107434600	Weak transcription	Esophagus	oesophagus
40	chr11:107421600-107434600	Weak transcription	Right Ventricle	heart
41	chr11:107421600-107434800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:107421600-107435400	Weak transcription	Thymus	Thymus
43	chr11:107421600-107435800	Weak transcription	Spleen	Spleen
44	chr11:107421800-107431800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:107421800-107434400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:107421800-107434600	Weak transcription	Fetal Muscle Leg	muscle
47	chr11:107421800-107434600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:107422000-107433400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:107422200-107434600	Weak transcription	Brain Germinal Matrix	brain
50	chr11:107422200-107434600	Weak transcription	Brain Substantia Nigra	brain

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