Variant report

Variant	rs17107220
Chromosome Location	chr5:147084192-147084193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10515590	0.93[EUR][1000 genomes]
rs11739236	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11748881	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12653715	0.88[AMR][1000 genomes]
rs13353961	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1344786	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107228	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2082401	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734122	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58280287	0.93[EUR][1000 genomes]
rs59853509	0.88[AMR][1000 genomes]
rs61473108	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6866266	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73270192	0.90[EUR][1000 genomes]
rs73271933	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271934	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078200-147084400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:147079000-147085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:147079600-147084400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:147079600-147084800	Weak transcription	Brain Angular Gyrus	brain
6	chr5:147079600-147091600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:147079600-147101200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:147081800-147084400	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:147081800-147084400	Weak transcription	Brain Substantia Nigra	brain
10	chr5:147084000-147085000	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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