Variant report

Variant	rs17107272
Chromosome Location	chr14:38334000-38334001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MIPOL1-6	chr14:38332971-38338005	NONHSAT036473

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11845151	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17107188	0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17107250	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17107258	1.00[CEU][hapmap]
rs17107262	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1952794	1.00[CEU][hapmap]
rs56299317	1.00[EUR][1000 genomes]
rs7150930	1.00[CEU][hapmap]
rs8013245	1.00[EUR][1000 genomes]
rs8013296	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs8018841	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530038	chr14:37590543-38336191	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
3	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv564386	chr14:38311855-38365605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38332400-38343600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:38333200-38334600	Enhancers	Liver	Liver
3	chr14:38333400-38334800	Enhancers	Esophagus	oesophagus
4	chr14:38333400-38334800	Enhancers	Stomach Mucosa	stomach
5	chr14:38333400-38335000	Enhancers	Stomach Smooth Muscle	stomach
6	chr14:38333400-38335600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:38333400-38335600	Enhancers	Colon Smooth Muscle	Colon
8	chr14:38333400-38335600	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:38333400-38335800	Flanking Active TSS	HepG2	liver
10	chr14:38333600-38334000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:38333600-38334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:38334000-38334200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:38334000-38334400	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:38334000-38334400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:38334000-38334600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr14:38334000-38334800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr14:38334000-38334800	Enhancers	A549	lung
18	chr14:38334000-38334800	Enhancers	NHDF-Ad	bronchial
19	chr14:38334000-38335000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:38334000-38335000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:38334000-38335000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:38334000-38335000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr14:38334000-38335000	Enhancers	Fetal Stomach	stomach
24	chr14:38334000-38335600	Enhancers	HSMM	muscle

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