Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10132310	1.00[MEX][hapmap]
rs10134094	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10483900	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17107494	1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs17107513	0.87[GIH][hapmap]
rs17107533	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17107587	1.00[CHB][hapmap]
rs17107601	0.82[CHB][hapmap]
rs2024332	0.82[CHB][hapmap]
rs2110418	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2110422	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2160076	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78865400-78871200	Weak transcription	Brain Anterior Caudate	brain
2	chr14:78868400-78870400	Enhancers	NH-A	brain
3	chr14:78869200-78872400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:78869400-78870800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:78869400-78871000	Active TSS	Brain Angular Gyrus	brain
6	chr14:78869400-78875000	Active TSS	GM12878-XiMat	blood
7	chr14:78869600-78870400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:78869600-78870600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:78869600-78870600	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr14:78869600-78870600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:78869600-78870800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr14:78869600-78871000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr14:78869600-78871600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:78869800-78870400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr14:78869800-78870400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr14:78869800-78870600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr14:78869800-78870800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:78870000-78871000	Active TSS	Brain Cingulate Gyrus	brain
19	chr14:78870200-78870600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr14:78870200-78871200	Weak transcription	Brain Germinal Matrix	brain

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