Variant report

Variant	rs17107621
Chromosome Location	chr14:78915304-78915305
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10483906	1.00[GIH][hapmap]
rs17107538	1.00[JPT][hapmap]
rs17107542	1.00[JPT][hapmap]
rs17107548	1.00[JPT][hapmap]
rs17107550	1.00[JPT][hapmap]
rs17107616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17107727	0.86[CHD][hapmap];0.85[GIH][hapmap]
rs17107787	1.00[GIH][hapmap]
rs17107813	1.00[GIH][hapmap]
rs2024332	1.00[JPT][hapmap]
rs8017625	1.00[JPT][hapmap]
rs8020296	1.00[JPT][hapmap]
rs8020600	1.00[JPT][hapmap]
rs8020758	1.00[JPT][hapmap]
rs918269	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78914800-78915400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:78914800-78915400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr14:78914800-78916600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:78915000-78915400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:78915000-78915400	Enhancers	Brain Substantia Nigra	brain
7	chr14:78915000-78918800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:78915200-78915400	Enhancers	Fetal Brain Male	brain
9	chr14:78915200-78915400	Flanking Active TSS	GM12878-XiMat	blood
10	chr14:78915200-78919600	Weak transcription	Brain Angular Gyrus	brain
11	chr14:78915200-78921000	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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