Variant report

Variant	rs17107751
Chromosome Location	chr14:70540568-70540569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70285025..70285958-chr14:70540373..70541349,3	MCF-7	breast:
2	chr14:70536677..70539751-chr14:70540125..70543304,3	MCF-7	breast:
3	chr14:70197690..70198396-chr14:70540247..70541152,2	MCF-7	breast:
4	chr14:70329637..70330392-chr14:70539675..70540590,2	MCF-7	breast:
5	chr14:70512725..70514427-chr14:70538303..70541776,3	MCF-7	breast:
6	chr14:70284892..70285665-chr14:70540396..70541290,4	MCF-7	breast:
7	chr14:70285510..70286099-chr14:70540409..70541333,2	K562	blood:
8	chr14:70512370..70513411-chr14:70540384..70541688,17	MCF-7	breast:
9	chr14:70197738..70198601-chr14:70540269..70540977,2	MCF-7	breast:
10	chr14:70512491..70513102-chr14:70540366..70541264,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11851507	1.00[AMR][1000 genomes]
rs11851542	1.00[AMR][1000 genomes]
rs17107773	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60473147	1.00[AMR][1000 genomes]
rs7146765	1.00[AMR][1000 genomes]
rs74061047	1.00[AMR][1000 genomes]
rs74061051	1.00[AMR][1000 genomes]
rs8013867	0.81[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv519644	chr14:70534823-70541026	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70526400-70549000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70530600-70548800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:70536800-70552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:70539000-70552200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:70539800-70541200	Enhancers	Hela-S3	cervix
6	chr14:70540400-70541400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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