Variant report

Variant	rs17107775
Chromosome Location	chr11:108055678-108055679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4987907	0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987946	0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987955	0.89[AFR][1000 genomes]
rs7103206	0.87[YRI][hapmap]
rs7925162	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108002200-108069600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:108009200-108071000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:108009400-108062600	Strong transcription	Primary T cells from cord blood	blood
5	chr11:108009400-108068400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:108009600-108068200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:108010600-108071200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:108017000-108075000	Strong transcription	Dnd41	blood
9	chr11:108024800-108070400	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:108026200-108072200	Strong transcription	Fetal Thymus	thymus
11	chr11:108026800-108071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:108027000-108069800	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr11:108028800-108068000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:108029200-108067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:108032600-108075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:108035400-108059600	Weak transcription	HSMMtube	muscle
17	chr11:108039400-108068200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:108040200-108057400	Weak transcription	Hela-S3	cervix
19	chr11:108040400-108074000	Weak transcription	Fetal Brain Male	brain
20	chr11:108040800-108069600	Weak transcription	Psoas Muscle	Psoas
21	chr11:108041400-108059000	Weak transcription	NHLF	lung
22	chr11:108041400-108059200	Weak transcription	Brain Angular Gyrus	brain
23	chr11:108041600-108074000	Weak transcription	Small Intestine	intestine
24	chr11:108041800-108068000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:108042400-108068000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:108042400-108068000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:108042400-108068200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:108042600-108069000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:108042600-108069200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr11:108042800-108060400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:108042800-108066800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:108042800-108068000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:108043000-108058200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:108043000-108066400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:108043000-108067600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:108043400-108070600	Weak transcription	A549	lung
37	chr11:108043600-108059200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:108043600-108064800	Weak transcription	Fetal Kidney	kidney
39	chr11:108044000-108056800	Weak transcription	Colonic Mucosa	Colon
40	chr11:108044400-108062600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr11:108044600-108070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:108045000-108057200	Weak transcription	NH-A	brain
43	chr11:108045200-108059800	Weak transcription	NHEK	skin
44	chr11:108046000-108065400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:108046200-108069600	Weak transcription	Stomach Mucosa	stomach
46	chr11:108046400-108056400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:108046400-108070200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:108046600-108067600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:108047600-108055800	Weak transcription	NHDF-Ad	bronchial
50	chr11:108048000-108057000	Strong transcription	Fetal Stomach	stomach

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