Variant report

Variant	rs17109078
Chromosome Location	chr14:79802978-79802979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11159402	1.00[YRI][hapmap]
rs17109060	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2197994	1.00[YRI][hapmap]
rs6574504	1.00[YRI][hapmap]
rs715697	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs8007640	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79792200-79825600	Weak transcription	Aorta	Aorta
2	chr14:79798800-79811600	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:79799800-79809200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:79800000-79809000	Weak transcription	Placenta	Placenta
5	chr14:79800200-79804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:79800200-79808400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:79800400-79805400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:79800800-79804000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:79800800-79807600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:79801400-79807800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:79801600-79804200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:79801600-79805400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:79801600-79805600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:79801600-79805600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:79801600-79807600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:79801600-79809200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:79802000-79804800	Enhancers	Brain Germinal Matrix	brain
18	chr14:79802800-79803000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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