Variant report

Variant	rs17109150
Chromosome Location	chr14:79878672-79878673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17109172	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197994	1.00[CHB][hapmap]
rs7151676	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72478816	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8005957	1.00[CHB][hapmap]
rs8006436	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79872600-79884800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:79875600-79880000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:79875800-79879800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:79875800-79879800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:79875800-79880200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:79877400-79879600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:79877800-79879000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:79878000-79879200	Weak transcription	NH-A	brain
9	chr14:79878400-79879800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:79878400-79882200	Weak transcription	NHLF	lung
11	chr14:79878600-79879800	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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