Variant report

Variant	rs17109156
Chromosome Location	chr10:89878442-89878443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89798093..89799597-chr10:89878429..89879964,2	MCF-7	breast:
2	chr10:89874980..89876628-chr10:89878193..89879862,2	K562	blood:
3	chr10:89620262..89623125-chr10:89876779..89879481,3	MCF-7	breast:
4	chr10:89620141..89628673-chr10:89867993..89880509,31	MCF-7	breast:
5	chr10:89621552..89623205-chr10:89876367..89879055,2	K562	blood:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17109095	1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17420447	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7095588	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89869600-89881400	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:89872200-89878800	Enhancers	Fetal Thymus	thymus
3	chr10:89872400-89881200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:89872800-89878800	Enhancers	Primary T cells from cord blood	blood
5	chr10:89873800-89879000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:89874000-89880200	Weak transcription	Right Atrium	heart
7	chr10:89874000-89881200	Enhancers	Primary B cells from cord blood	blood
8	chr10:89874000-89891400	Weak transcription	Left Ventricle	heart
9	chr10:89874200-89878600	Weak transcription	Stomach Mucosa	stomach
10	chr10:89874600-89878800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr10:89874600-89879800	Weak transcription	Lung	lung
12	chr10:89874600-89880800	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:89874600-89882400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:89875200-89879200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:89875400-89878600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:89875400-89879000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:89875400-89879000	Enhancers	HSMMtube	muscle
18	chr10:89876000-89880600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:89876200-89878600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:89876200-89878800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr10:89876200-89879200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr10:89876600-89878800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:89876600-89878800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:89876600-89879400	Flanking Active TSS	GM12878-XiMat	blood
25	chr10:89877000-89878800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:89877000-89878800	Enhancers	Spleen	Spleen
27	chr10:89877200-89881400	Weak transcription	NHLF	lung
28	chr10:89877400-89880000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:89877400-89880400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:89877800-89878800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr10:89877800-89878800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr10:89877800-89878800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:89877800-89878800	Enhancers	Adipose Nuclei	Adipose
34	chr10:89877800-89879000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:89878000-89878600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:89878000-89878600	Weak transcription	HSMM	muscle
37	chr10:89878000-89879400	Enhancers	Liver	Liver
38	chr10:89878200-89878600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:89878200-89878600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:89878200-89879000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:89878200-89879800	Weak transcription	Dnd41	blood
42	chr10:89878200-89880000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:89878200-89880000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:89878200-89880200	Weak transcription	Thymus	Thymus
45	chr10:89878400-89878800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:89878400-89878800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr10:89878400-89878800	Enhancers	NHEK	skin
48	chr10:89878400-89879000	Enhancers	Primary hematopoietic stem cells	blood
49	chr10:89878400-89879400	Enhancers	HMEC	breast
50	chr10:89878400-89880000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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