Variant report

Variant	rs17109209
Chromosome Location	chr14:25343280-25343281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10483288	1.00[YRI][hapmap]
rs12879323	1.00[YRI][hapmap]
rs12881381	1.00[YRI][hapmap]
rs12886050	1.00[YRI][hapmap]
rs12893496	1.00[YRI][hapmap]
rs12897835	1.00[YRI][hapmap]
rs1551775	1.00[YRI][hapmap]
rs17106989	1.00[AMR][1000 genomes]
rs74037660	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25317800-25344000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:25319600-25344600	Weak transcription	NHDF-Ad	bronchial
3	chr14:25326400-25343600	Weak transcription	Gastric	stomach
4	chr14:25330800-25344000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:25331000-25343600	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:25331000-25349800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:25331200-25349800	Weak transcription	HSMM	muscle
8	chr14:25332600-25344400	Weak transcription	Stomach Mucosa	stomach
9	chr14:25334200-25344000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:25340600-25343600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:25340600-25344400	Enhancers	Right Ventricle	heart
12	chr14:25340600-25345000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:25341000-25344200	Weak transcription	Fetal Lung	lung
14	chr14:25341400-25344000	Weak transcription	Fetal Intestine Large	intestine
15	chr14:25341600-25344400	Enhancers	Left Ventricle	heart
16	chr14:25341800-25344000	Weak transcription	Fetal Intestine Small	intestine
17	chr14:25342000-25343400	Enhancers	Fetal Heart	heart
18	chr14:25342000-25343400	Weak transcription	HepG2	liver
19	chr14:25342400-25346800	Enhancers	Adipose Nuclei	Adipose
20	chr14:25342600-25345600	Enhancers	Brain Anterior Caudate	brain
21	chr14:25342800-25344400	Enhancers	Lung	lung
22	chr14:25342800-25351000	Enhancers	Brain Substantia Nigra	brain
23	chr14:25343000-25343400	Enhancers	Brain Angular Gyrus	brain
24	chr14:25343000-25343400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:25343000-25351200	Enhancers	Brain Cingulate Gyrus	brain
26	chr14:25343200-25343600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:25343200-25343800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr14:25343200-25344000	Weak transcription	Pancreas	Pancrea
29	chr14:25343200-25349000	Weak transcription	Right Atrium	heart
30	chr14:25343200-25349600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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