Variant report

Variant	rs17109301
Chromosome Location	chr10:95511648-95511649
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95510815..95514212-chr10:95521474..95524274,4	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17109312	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95505800-95517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:95506600-95511800	Weak transcription	Stomach Mucosa	stomach
3	chr10:95506800-95511800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:95507200-95511800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:95507600-95511800	Weak transcription	HSMMtube	muscle
6	chr10:95507800-95511800	Weak transcription	NH-A	brain
7	chr10:95508200-95512800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:95508200-95515000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:95508400-95511800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr10:95508400-95512200	Enhancers	Fetal Intestine Large	intestine
11	chr10:95508400-95512200	Enhancers	Fetal Intestine Small	intestine
12	chr10:95509200-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:95509200-95514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:95509400-95511800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:95509400-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:95509400-95511800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:95509400-95511800	Weak transcription	Right Atrium	heart
18	chr10:95509400-95512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:95509600-95511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:95509600-95511800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:95509600-95511800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:95509600-95511800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:95509600-95511800	Weak transcription	NHDF-Ad	bronchial
24	chr10:95509600-95511800	Weak transcription	Osteobl	bone
25	chr10:95509600-95512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:95509600-95514800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:95509800-95512200	Weak transcription	NHLF	lung
28	chr10:95509800-95514000	Weak transcription	Small Intestine	intestine
29	chr10:95510200-95512000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr10:95510200-95517600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:95510400-95512000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:95510400-95512600	Enhancers	Placenta	Placenta
33	chr10:95510600-95512000	Enhancers	H9 Cell Line	embryonic stem cell
34	chr10:95510800-95511800	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr10:95510800-95513200	Enhancers	Hela-S3	cervix
36	chr10:95510800-95514400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:95511000-95511800	Weak transcription	Gastric	stomach
38	chr10:95511000-95512000	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr10:95511000-95512000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr10:95511000-95512000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:95511000-95512000	Enhancers	Lung	lung
42	chr10:95511000-95512200	Enhancers	Placenta Amnion	Placenta Amnion
43	chr10:95511000-95512800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:95511000-95516800	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr10:95511000-95517600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:95511200-95512000	Enhancers	Psoas Muscle	Psoas
47	chr10:95511200-95512400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr10:95511200-95512600	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr10:95511200-95512800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:95511400-95511800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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