Variant report

Variant	rs17109360
Chromosome Location	chr14:25427787-25427788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10483291	0.82[GIH][hapmap]
rs12586327	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25422000-25428400	Weak transcription	Small Intestine	intestine
2	chr14:25422600-25428400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:25422600-25428400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:25422600-25434000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:25422800-25428400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:25423400-25428000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:25423400-25428400	Weak transcription	Adipose Nuclei	Adipose
8	chr14:25423600-25429200	Weak transcription	Placenta	Placenta
9	chr14:25423800-25428200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:25424200-25428000	Weak transcription	Fetal Kidney	kidney
11	chr14:25424200-25428200	Weak transcription	Fetal Lung	lung
12	chr14:25424200-25428600	Weak transcription	HepG2	liver
13	chr14:25424600-25428000	Weak transcription	Brain Angular Gyrus	brain
14	chr14:25424600-25428000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:25424600-25428400	Weak transcription	Brain Hippocampus Middle	brain
16	chr14:25424600-25460600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr14:25424800-25428800	Weak transcription	Stomach Mucosa	stomach
18	chr14:25424800-25429200	Weak transcription	Gastric	stomach
19	chr14:25425000-25429600	Enhancers	HSMMtube	muscle
20	chr14:25425200-25428400	Weak transcription	Lung	lung
21	chr14:25425200-25429600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:25425800-25429400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr14:25426200-25428400	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:25426200-25430000	Enhancers	Brain Anterior Caudate	brain
25	chr14:25426400-25428400	Weak transcription	Left Ventricle	heart
26	chr14:25426400-25428400	Weak transcription	Pancreas	Pancrea
27	chr14:25426400-25428400	Weak transcription	Right Atrium	heart
28	chr14:25426400-25428400	Weak transcription	Right Ventricle	heart
29	chr14:25426400-25428400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:25426400-25435000	Weak transcription	Aorta	Aorta
31	chr14:25426600-25430600	Enhancers	Fetal Intestine Small	intestine
32	chr14:25426800-25428400	Weak transcription	GM12878-XiMat	blood
33	chr14:25426800-25428600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr14:25426800-25430600	Enhancers	Colon Smooth Muscle	Colon
35	chr14:25427000-25428800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr14:25427000-25428800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:25427000-25430000	Enhancers	Rectal Smooth Muscle	rectum
38	chr14:25427000-25430400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr14:25427000-25430600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:25427200-25428000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr14:25427200-25428000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:25427200-25428200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr14:25427200-25430600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:25427200-25430600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr14:25427400-25427800	Weak transcription	Fetal Heart	heart
46	chr14:25427400-25428200	Enhancers	Osteobl	bone
47	chr14:25427400-25430200	Enhancers	Brain Cingulate Gyrus	brain
48	chr14:25427400-25430600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:25427400-25430600	Enhancers	Fetal Intestine Large	intestine
50	chr14:25427400-25431000	Enhancers	Stomach Smooth Muscle	stomach

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