Variant report

Variant	rs17110474
Chromosome Location	chr1:84966766-84966767
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84944599..84947463-chr1:84964878..84967395,3	MCF-7	breast:
2	chr1:84954216..84956546-chr1:84965976..84968272,2	MCF-7	breast:
3	chr1:84966614..84978118-chr1:85034515..85041986,38	K562	blood:

Variant related genes	Relation type
ENSG00000117151	Chromatin interaction
ENSG00000117133	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12406740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17111225	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs17111440	0.81[JPT][hapmap]
rs17111498	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84946000-84967000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:84946000-84969600	Weak transcription	Esophagus	oesophagus
3	chr1:84946000-84970400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:84946000-84970800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:84946800-84967400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:84947400-84969800	Weak transcription	Aorta	Aorta
7	chr1:84947800-84967800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:84949600-84968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:84951200-84971000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:84952400-84967400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:84953800-84968400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:84954800-84966800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:84954800-84967000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr1:84954800-84967600	Strong transcription	Primary hematopoietic stem cells	blood
15	chr1:84954800-84969200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:84955000-84966800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:84955000-84967000	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr1:84955000-84967200	Strong transcription	Fetal Thymus	thymus
19	chr1:84955000-84967200	Strong transcription	HSMM	muscle
20	chr1:84955000-84967400	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr1:84955000-84967400	Strong transcription	HUVEC	blood vessel
22	chr1:84955000-84967400	Strong transcription	NH-A	brain
23	chr1:84955000-84967400	Strong transcription	NHDF-Ad	bronchial
24	chr1:84955000-84968400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:84955200-84966800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:84955200-84967000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr1:84955200-84967400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:84955200-84967400	Strong transcription	Adipose Nuclei	Adipose
29	chr1:84955200-84967400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr1:84955200-84968000	Strong transcription	Osteobl	bone
31	chr1:84955200-84968200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:84955200-84968800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:84955200-84968800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:84955800-84967400	Strong transcription	HMEC	breast
35	chr1:84956000-84969400	Weak transcription	Pancreas	Pancrea
36	chr1:84956800-84966800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr1:84956800-84969400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:84956800-84970400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:84958000-84968800	Weak transcription	Right Ventricle	heart
40	chr1:84958600-84969400	Weak transcription	Gastric	stomach
41	chr1:84958600-84970400	Weak transcription	Lung	lung
42	chr1:84960200-84967200	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr1:84960600-84966800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:84960600-84967000	Strong transcription	Placenta	Placenta
45	chr1:84960600-84968800	Weak transcription	Psoas Muscle	Psoas
46	chr1:84961400-84968800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr1:84961600-84968200	Strong transcription	K562	blood
48	chr1:84963000-84967000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:84963000-84967400	Genic enhancers	Liver	Liver
50	chr1:84963000-84968200	Weak transcription	Fetal Intestine Small	intestine

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