Variant report

Variant	rs17111860
Chromosome Location	chr1:95072635-95072636
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95067748..95070486-chr1:95070993..95073979,4	K562	blood:
2	chr1:95068045..95070486-chr1:95071108..95072675,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1098726	0.83[EUR][1000 genomes]
rs12029867	1.00[LWK][hapmap]
rs12408608	0.84[EUR][1000 genomes]
rs34248730	0.83[EUR][1000 genomes]
rs7542900	0.83[EUR][1000 genomes]
rs841705	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870696	chr1:95005220-95081587	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871391	chr1:95005220-95083836	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv871279	chr1:95028981-95083836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1804937	chr1:95051930-95081587	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95059400-95074200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:95061400-95076800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:95065200-95081000	Enhancers	Stomach Mucosa	stomach
4	chr1:95065400-95081400	Enhancers	Fetal Intestine Small	intestine
5	chr1:95065600-95087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:95068000-95078200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:95068200-95073400	Weak transcription	Gastric	stomach
8	chr1:95068200-95074000	Enhancers	Duodenum Mucosa	Duodenum
9	chr1:95069200-95074400	Weak transcription	NHLF	lung
10	chr1:95069400-95077800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:95069600-95078200	Weak transcription	Dnd41	blood
12	chr1:95070400-95078800	Enhancers	Fetal Intestine Large	intestine
13	chr1:95070800-95073800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:95071000-95073400	Weak transcription	A549	lung
15	chr1:95071400-95072800	Enhancers	Pancreas	Pancrea
16	chr1:95071400-95074400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr1:95071600-95072800	Enhancers	HepG2	liver
18	chr1:95071600-95073200	Enhancers	NHEK	skin
19	chr1:95071600-95074200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr1:95071800-95073600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:95071800-95074000	Weak transcription	K562	blood
22	chr1:95071800-95076800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:95072000-95073800	Enhancers	HMEC	breast
24	chr1:95072000-95074200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr1:95072000-95075200	Enhancers	Colonic Mucosa	Colon
26	chr1:95072000-95077400	Weak transcription	Small Intestine	intestine
27	chr1:95072200-95073600	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr1:95072200-95074200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:95072200-95075400	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr1:95072200-95078800	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr1:95072200-95080200	Weak transcription	Primary B cells from cord blood	blood
32	chr1:95072400-95073200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:95072600-95073200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr1:95072600-95073400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:95072600-95074000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:95072600-95074000	Weak transcription	NH-A	brain

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