Variant report

Variant	rs17111883
Chromosome Location	chr10:98225466-98225467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12098297	1.00[AMR][1000 genomes]
rs2154204	0.81[GIH][hapmap]
rs58018872	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151349	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151351	1.00[AMR][1000 genomes]
rs74151352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98223600-98229200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:98223800-98226400	Weak transcription	GM12878-XiMat	blood
3	chr10:98224000-98225600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:98225400-98226400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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