Variant report

Variant	rs17112459
Chromosome Location	chr14:42455216-42455217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11849882	0.95[AFR][1000 genomes]
rs56987246	1.00[ASN][1000 genomes]
rs58876760	1.00[ASN][1000 genomes]
rs60321754	0.95[AFR][1000 genomes]
rs6572122	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6572123	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158008	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73305379	0.91[AFR][1000 genomes]
rs73312622	1.00[ASN][1000 genomes]
rs8006773	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008951	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009428	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901740	chr14:42386859-42477256	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42455200-42455400	Enhancers	Primary B cells from cord blood	blood
2	chr14:42455200-42457000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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