Variant report

Variant	rs17113262
Chromosome Location	chr1:56442701-56442702
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11206694	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11799937	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11809408	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11809420	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12409063	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2192102	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2192103	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28397759	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4926705	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927287	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56440000-56451400	Weak transcription	Ovary	ovary
2	chr1:56441400-56445600	Weak transcription	Hela-S3	cervix
3	chr1:56441400-56446000	Weak transcription	NHLF	lung
4	chr1:56441400-56446200	Weak transcription	Osteobl	bone
5	chr1:56441400-56446400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:56441600-56445800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:56441600-56446800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:56442000-56443600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56442600-56446200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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