Variant report

Variant	rs17113369
Chromosome Location	chr1:95787223-95787224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17113351	0.90[AFR][1000 genomes]
rs17113357	0.84[AFR][1000 genomes]
rs17113362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236390	0.82[AFR][1000 genomes]
rs2236391	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56854428	0.82[AFR][1000 genomes]
rs72968523	0.95[ASN][1000 genomes]
rs9729952	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830648	chr1:95760162-95926264	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1006113	chr1:95768502-96139003	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529002	chr1:95781217-95805002	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95786600-95787400	Active TSS	Brain Anterior Caudate	brain
2	chr1:95786600-95787400	Active TSS	Brain Hippocampus Middle	brain
3	chr1:95786800-95787400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr1:95786800-95787400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:95786800-95787400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:95786800-95787400	Active TSS	Brain Angular Gyrus	brain
7	chr1:95786800-95787400	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr1:95786800-95787800	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr1:95786800-95789200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:95786800-95789600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:95787000-95787800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:95787000-95787800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:95787000-95788200	Enhancers	Fetal Brain Male	brain
14	chr1:95787000-95789400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:95787200-95787400	Active TSS	Brain Substantia Nigra	brain
16	chr1:95787200-95787400	Flanking Active TSS	Fetal Brain Female	brain
17	chr1:95787200-95787400	Active TSS	Fetal Lung	lung
18	chr1:95787200-95787600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:95787200-95787600	Weak transcription	NHDF-Ad	bronchial
20	chr1:95787200-95787800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:95787200-95788000	Enhancers	Brain Germinal Matrix	brain
22	chr1:95787200-95788200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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