Variant report

Variant	rs17113419
Chromosome Location	chr1:56633821-56633822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12048642	0.93[AFR][1000 genomes]
rs17113432	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34150008	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588610	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72912227	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912230	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912234	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912237	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912239	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912241	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74072836	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74072839	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7542097	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56625600-56636200	Weak transcription	Aorta	Aorta
2	chr1:56632800-56634000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:56633000-56634000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:56633000-56634200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:56633200-56634200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:56633600-56636600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:56633800-56636600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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