Variant report

Variant	rs17113721
Chromosome Location	chr10:90625268-90625269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10887866	0.84[CEU][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11202886	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202889	0.85[CEU][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12571023	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs17113989	0.92[CEU][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17114183	0.84[CEU][hapmap]
rs3781207	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs3781211	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs714887	0.83[JPT][hapmap]
rs7911106	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90625000-90625400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:90625000-90625400	Enhancers	Esophagus	oesophagus
3	chr10:90625000-90625400	Enhancers	HMEC	breast
4	chr10:90625000-90625400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr10:90625000-90625600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:90625000-90625600	Enhancers	NHEK	skin
7	chr10:90625000-90626000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:90625000-90626000	Enhancers	Fetal Lung	lung
9	chr10:90625000-90626600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:90625200-90626200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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