Variant report

Variant	rs17114038
Chromosome Location	chr10:90661200-90661201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17113384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90641800-90661800	Weak transcription	Thymus	Thymus
2	chr10:90642000-90684800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:90642000-90686400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:90647400-90675200	Weak transcription	Spleen	Spleen
5	chr10:90647400-90681000	Weak transcription	Aorta	Aorta
6	chr10:90652400-90663000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:90652600-90661400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:90652800-90661200	Weak transcription	NHEK	skin
9	chr10:90652800-90661800	Weak transcription	HMEC	breast
10	chr10:90654000-90687400	Weak transcription	Right Ventricle	heart
11	chr10:90654200-90661800	Enhancers	Fetal Intestine Large	intestine
12	chr10:90655200-90675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:90655200-90701400	Weak transcription	Gastric	stomach
14	chr10:90655400-90661200	Weak transcription	Fetal Thymus	thymus
15	chr10:90656200-90662000	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:90657200-90661400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:90657400-90661400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:90657400-90661400	Weak transcription	NH-A	brain
19	chr10:90657400-90664000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:90657400-90667800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:90657400-90668000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:90657400-90676200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:90657600-90661200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:90657600-90661400	Weak transcription	Ovary	ovary
25	chr10:90657600-90661800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:90657600-90661800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:90657600-90661800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:90657600-90661800	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:90657600-90661800	Weak transcription	Left Ventricle	heart
30	chr10:90657600-90662400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:90657600-90670600	Weak transcription	Liver	Liver
32	chr10:90657600-90675400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:90657600-90677600	Weak transcription	Lung	lung
34	chr10:90657600-90686400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:90657800-90661800	Enhancers	Duodenum Mucosa	Duodenum
36	chr10:90657800-90661800	Enhancers	NHDF-Ad	bronchial
37	chr10:90658000-90665000	Weak transcription	Fetal Lung	lung
38	chr10:90658000-90668200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:90658000-90672800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:90658200-90661800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:90658400-90665600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:90658600-90661200	Enhancers	Brain Angular Gyrus	brain
43	chr10:90658600-90686000	Weak transcription	Brain Anterior Caudate	brain
44	chr10:90658800-90661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:90658800-90661800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:90658800-90661800	Weak transcription	Right Atrium	heart
47	chr10:90658800-90664000	Weak transcription	Colonic Mucosa	Colon
48	chr10:90659000-90661800	Weak transcription	Fetal Stomach	stomach
49	chr10:90659400-90661600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:90659600-90662000	Enhancers	Fetal Intestine Small	intestine

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