Variant report

Variant	rs17114302
Chromosome Location	chr10:90709325-90709326
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10887866	1.00[ASW][hapmap];0.81[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.91[YRI][hapmap]
rs11202886	0.84[CHB][hapmap];0.88[CHD][hapmap]
rs11202889	0.81[CEU][hapmap];0.89[CHB][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes]
rs12571023	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17114183	0.90[CEU][hapmap];0.87[CHB][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17114337	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3781207	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3781211	1.00[ASW][hapmap];0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs714887	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90692400-90711000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:90695600-90710200	Weak transcription	NHEK	skin
3	chr10:90695600-90710800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:90695800-90709800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:90695800-90709800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:90695800-90709800	Weak transcription	HMEC	breast
7	chr10:90695800-90710000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:90695800-90710000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:90695800-90710800	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:90695800-90710800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:90695800-90711000	Weak transcription	Brain Angular Gyrus	brain
12	chr10:90695800-90711200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:90695800-90720800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:90699000-90724200	Weak transcription	Small Intestine	intestine
15	chr10:90699400-90710000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:90699400-90715400	Weak transcription	HepG2	liver
17	chr10:90699600-90710800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:90699600-90712200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:90699600-90721800	Weak transcription	Fetal Thymus	thymus
20	chr10:90699800-90709800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:90699800-90710000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:90699800-90710000	Weak transcription	Right Ventricle	heart
23	chr10:90700000-90712000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:90700400-90709800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:90701200-90709400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:90701200-90710400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:90701200-90710800	Weak transcription	Adipose Nuclei	Adipose
28	chr10:90701400-90720800	Weak transcription	Primary T cells from cord blood	blood
29	chr10:90701600-90711600	Weak transcription	Esophagus	oesophagus
30	chr10:90701800-90709800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:90702000-90709800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr10:90702400-90709800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:90703600-90710000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:90703600-90710000	Weak transcription	Colonic Mucosa	Colon
35	chr10:90703600-90711600	Weak transcription	Spleen	Spleen
36	chr10:90703800-90709800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:90703800-90711600	Weak transcription	Pancreas	Pancrea
38	chr10:90704000-90710800	Weak transcription	Left Ventricle	heart
39	chr10:90704000-90711600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:90704000-90721400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:90704200-90710800	Weak transcription	Placenta	Placenta
42	chr10:90704800-90709800	Weak transcription	HSMM	muscle
43	chr10:90705000-90721800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:90705200-90709800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:90705800-90710800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:90705800-90712800	Weak transcription	Primary B cells from cord blood	blood
47	chr10:90706800-90710800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:90707000-90713200	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr10:90707200-90711400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:90707400-90709800	Weak transcription	Primary monocytes fromperipheralblood	blood

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