Variant report

Variant	rs17115220
Chromosome Location	chr1:57615514-57615515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10489464	1.00[CHB][hapmap]
rs11206991	1.00[CHB][hapmap]
rs11806749	1.00[CHB][hapmap]
rs12026905	1.00[CHB][hapmap]
rs12041971	1.00[CHB][hapmap]
rs12069180	0.87[EUR][1000 genomes]
rs17115247	1.00[CHB][hapmap]
rs476568	1.00[CHB][hapmap]
rs484064	1.00[CHB][hapmap]
rs490793	1.00[CHB][hapmap]
rs510824	1.00[CHB][hapmap]
rs513259	1.00[CHB][hapmap]
rs535415	1.00[CHB][hapmap]
rs537307	1.00[CHB][hapmap]
rs546020	1.00[CHB][hapmap]
rs550511	1.00[CHB][hapmap]
rs553453	1.00[CHB][hapmap]
rs564665	1.00[CHB][hapmap]
rs578962	1.00[CHB][hapmap]
rs579057	1.00[CHB][hapmap]
rs7542527	1.00[CHB][hapmap]
rs9970799	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17115220	FOXO3	trans	lymphoblastoid	seeQTL
rs17115220	C1orf177	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57551400-57622000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57609000-57621800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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