Variant report

Variant	rs17115366
Chromosome Location	chr1:57672426-57672427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10489465	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489468	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs11206997	0.83[CEU][hapmap]
rs12040107	0.83[CEU][hapmap]
rs12042042	0.83[CEU][hapmap]
rs12239967	0.86[ASN][1000 genomes]
rs1504595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17115341	0.83[CEU][hapmap]
rs17115390	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs58148876	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57664600-57678400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57670400-57672600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:57670600-57672600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:57670800-57672600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:57671000-57673800	Weak transcription	Fetal Intestine Small	intestine
6	chr1:57671000-57674600	Weak transcription	Fetal Brain Female	brain
7	chr1:57671200-57673600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:57671600-57672600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr1:57671800-57672600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr1:57672200-57674400	Weak transcription	Fetal Brain Male	brain
11	chr1:57672400-57675000	Weak transcription	Fetal Heart	heart
12	chr1:57672400-57680600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:57672400-57680800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links