Variant report

Variant	rs17115486
Chromosome Location	chr12:76084705-76084706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr12:76084207-76084761	HCT-116	colon:	n/a	n/a
2	EP300	chr12:76084217-76084996	A549	lung:	n/a	chr12:76084490-76084499
3	GATA3	chr12:76084147-76085019	A549	lung:	n/a	chr12:76084241-76084252
4	SP1	chr12:76084241-76084783	A549	lung:	n/a	n/a
5	TCF12	chr12:76084293-76084769	A549	lung:	n/a	chr12:76084391-76084398
6	MAX	chr12:76084004-76084906	A549	lung:	n/a	n/a
7	E2F4	chr12:76084484-76084751	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr12:76084347-76084833	MCF10A-Er-Src	breast:	n/a	n/a
9	JUND	chr12:76084264-76084801	A549	lung:	n/a	n/a
10	E2F6	chr12:76084138-76084830	A549	lung:	n/a	n/a
11	MXI1	chr12:76083731-76084997	IMR90	lung:	n/a	n/a
12	MAFK	chr12:76084304-76084830	IMR90	lung:	n/a	n/a
13	STAT3	chr12:76084294-76084860	MCF10A-Er-Src	breast:	n/a	n/a
14	SP1	chr12:76084218-76084922	A549	lung:	n/a	n/a
15	FOSL2	chr12:76084346-76084777	A549	lung:	n/a	n/a
16	STAT3	chr12:76084375-76084794	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr12:76083645-76084850	IMR90	lung:	n/a	n/a
18	RAD21	chr12:76084231-76084756	A549	lung:	n/a	chr12:76084277-76084284
19	GATA3	chr12:76084304-76084856	A549	lung:	n/a	n/a
20	CEBPB	chr12:76084233-76084981	A549	lung:	n/a	n/a
21	POLR2A	chr12:76084412-76084755	MCF10A-Er-Src	breast:	n/a	n/a
22	FOXA2	chr12:76084119-76084732	A549	lung:	n/a	n/a
23	POLR2A	chr12:76084250-76084859	MCF10A-Er-Src	breast:	n/a	n/a
24	JUND	chr12:76084270-76084759	A549	lung:	n/a	n/a
25	FOS	chr12:76084332-76084832	MCF10A-Er-Src	breast:	n/a	n/a
26	RAD21	chr12:76084155-76084921	IMR90	lung:	n/a	chr12:76084277-76084284
27	FOXA2	chr12:76084134-76084922	A549	lung:	n/a	n/a
28	FOSL2	chr12:76084175-76084958	A549	lung:	n/a	n/a
29	EP300	chr12:76084159-76084925	A549	lung:	n/a	chr12:76084490-76084499
30	BCL3	chr12:76084337-76084864	A549	lung:	n/a	n/a
31	MAX	chr12:76084113-76084867	A549	lung:	n/a	n/a
32	TCF12	chr12:76084050-76084894	A549	lung:	n/a	chr12:76084391-76084398
33	CEBPB	chr12:76084221-76084870	IMR90	lung:	n/a	n/a
34	CEBPB	chr12:76084438-76084841	A549	lung:	n/a	n/a
35	FOS	chr12:76084321-76084858	MCF10A-Er-Src	breast:	n/a	n/a
36	POLR2A	chr12:76084322-76084756	U87	brain:	n/a	n/a
37	STAT3	chr12:76084349-76084838	MCF10A-Er-Src	breast:	n/a	n/a
38	REST	chr12:76084260-76084712	PFSK-1	brain:	n/a	chr12:76084417-76084437 chr12:76084417-76084437
39	MYC	chr12:76084129-76084858	MCF10A-Er-Src	breast:	n/a	n/a
40	MYC	chr12:76084024-76084856	MCF10A-Er-Src	breast:	n/a	n/a
41	STAT3	chr12:76084343-76084813	MCF10A-Er-Src	breast:	n/a	n/a
42	FOS	chr12:76084296-76084855	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:76077618..76079261-chr12:76083300..76084983,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258245	TF binding region
ENSG00000251893	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12306799	1.00[AMR][1000 genomes]
rs74109763	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036987	chr12:75415532-76101559	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv948653	chr12:75773464-76220618	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv899314	chr12:76079814-76110751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:76076200-76098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:76079000-76093600	Weak transcription	Psoas Muscle	Psoas
3	chr12:76079400-76099800	Weak transcription	Right Atrium	heart
4	chr12:76083200-76085000	Enhancers	HMEC	breast
5	chr12:76083600-76085000	Enhancers	NHEK	skin
6	chr12:76083600-76087400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr12:76083800-76085000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:76083800-76085000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:76083800-76085000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:76083800-76085000	Enhancers	HSMM	muscle
11	chr12:76083800-76085000	Enhancers	NH-A	brain
12	chr12:76083800-76087000	Enhancers	Osteobl	bone
13	chr12:76084200-76084800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:76084200-76085800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:76084400-76085400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:76084400-76085400	Weak transcription	NHDF-Ad	bronchial
17	chr12:76084400-76086000	Weak transcription	NHLF	lung
18	chr12:76084400-76087800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:76084400-76087800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:76084600-76085800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr12:76084600-76088400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr12:76084600-76088400	Weak transcription	K562	blood
23	chr12:76084600-76088600	Weak transcription	A549	lung
24	chr12:76084600-76099600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links