Variant report

Variant	rs1711554
Chromosome Location	chr3:99428998-99428999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10935917	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610509	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1708167	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1711564	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs497868	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs498411	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs652026	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs669676	0.92[CEU][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs704571	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs704572	0.82[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs704574	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs704577	0.80[AMR][1000 genomes]
rs7629046	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs792831	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs792833	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs792835	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs792836	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs792837	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs793481	0.80[AMR][1000 genomes]
rs793483	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs793484	0.80[AMR][1000 genomes]
rs793485	0.85[CEU][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99411400-99439600	Weak transcription	NHEK	skin
3	chr3:99419800-99430400	Weak transcription	Left Ventricle	heart
4	chr3:99420000-99429400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:99420000-99432800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:99420000-99433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:99420600-99430400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:99422600-99431200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:99423400-99432400	Genic enhancers	Osteobl	bone
10	chr3:99423800-99440000	Weak transcription	Adipose Nuclei	Adipose
11	chr3:99425600-99433000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:99426600-99439800	Weak transcription	NHLF	lung
13	chr3:99427000-99434200	Genic enhancers	Muscle Satellite Cultured Cells	--
14	chr3:99427200-99432600	Genic enhancers	HUVEC	blood vessel
15	chr3:99427400-99431000	Weak transcription	NHDF-Ad	bronchial
16	chr3:99427600-99432600	Weak transcription	HSMMtube	muscle
17	chr3:99427800-99432600	Strong transcription	HSMM	muscle
18	chr3:99428000-99430000	Strong transcription	NH-A	brain
19	chr3:99428000-99439600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:99428200-99429600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:99428200-99436800	Weak transcription	Ovary	ovary
22	chr3:99428200-99439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:99428200-99442800	Weak transcription	Aorta	Aorta
24	chr3:99428400-99431400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:99428400-99439600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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