Variant report

Variant	rs17115565
Chromosome Location	chr1:57766345-57766346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17115509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115589	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1847536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57747600-57769400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:57751600-57770600	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57763600-57768000	Weak transcription	Fetal Brain Female	brain
4	chr1:57763600-57769000	Weak transcription	Fetal Brain Male	brain
5	chr1:57765600-57766400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:57765600-57766400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:57765600-57767800	Strong transcription	Fetal Intestine Small	intestine
8	chr1:57766000-57767200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:57766200-57766600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:57766200-57767000	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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