Variant report

Variant	rs17115680
Chromosome Location	chr14:45361901-45361902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:45360749..45362918-chr14:45364710..45368351,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179476	Chromatin interaction
ENSG00000258633	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11845904	0.96[YRI][hapmap]
rs11846502	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11847071	1.00[GIH][hapmap];0.85[TSI][hapmap]
rs11847933	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11848334	0.96[YRI][hapmap]
rs11851516	0.93[AFR][1000 genomes]
rs11851764	1.00[EUR][1000 genomes]
rs11851962	0.96[YRI][hapmap]
rs11852210	0.96[YRI][hapmap]
rs17115677	0.80[AFR][1000 genomes]
rs17115679	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17115681	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17115692	1.00[ASN][1000 genomes]
rs45550535	1.00[EUR][1000 genomes]
rs56988712	1.00[EUR][1000 genomes]
rs57147026	0.84[AFR][1000 genomes]
rs57261684	1.00[ASN][1000 genomes]
rs57494105	1.00[EUR][1000 genomes]
rs58152153	1.00[EUR][1000 genomes]
rs58557583	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59698927	1.00[EUR][1000 genomes]
rs59992752	0.85[AFR][1000 genomes]
rs60713065	1.00[EUR][1000 genomes]
rs6572288	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6572290	0.96[YRI][hapmap]
rs73334118	1.00[ASN][1000 genomes]
rs73334121	1.00[ASN][1000 genomes]
rs73347154	1.00[EUR][1000 genomes]
rs73347158	1.00[EUR][1000 genomes]
rs73347179	1.00[EUR][1000 genomes]
rs73347182	1.00[EUR][1000 genomes]
rs73347199	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73348920	1.00[EUR][1000 genomes]
rs73348927	1.00[EUR][1000 genomes]
rs73348928	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv901832	chr14:44847444-45415597	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv995092	chr14:44973489-45393462	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
7	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45359400-45365800	Weak transcription	Fetal Kidney	kidney
2	chr14:45359800-45365000	Weak transcription	HepG2	liver
3	chr14:45359800-45365600	Weak transcription	Fetal Heart	heart
4	chr14:45360000-45365600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr14:45360400-45365800	Weak transcription	Fetal Lung	lung
6	chr14:45361400-45365600	Weak transcription	Primary hematopoietic stem cells	blood

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