Variant report

Variant	rs17115761
Chromosome Location	chr1:57872860-57872861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10493220	0.86[MEX][hapmap]
rs12134278	1.00[CEU][hapmap]
rs12136930	1.00[CEU][hapmap]
rs12144810	1.00[CEU][hapmap]
rs12401405	1.00[AFR][1000 genomes]
rs12410761	1.00[AFR][1000 genomes]
rs1341321	1.00[CEU][hapmap]
rs1404388	1.00[CEU][hapmap]
rs1524705	1.00[CEU][hapmap]
rs1524720	1.00[CEU][hapmap]
rs1524729	1.00[CEU][hapmap]
rs17460074	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs2691454	1.00[CEU][hapmap]
rs3958553	1.00[CEU][hapmap]
rs6681521	1.00[CEU][hapmap]
rs72676921	1.00[AFR][1000 genomes]
rs7550226	1.00[CEU][hapmap]
rs947242	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57860400-57874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:57862400-57873200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:57863800-57875400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:57864400-57873400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:57867600-57874400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:57867800-57874600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:57867800-57875400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:57868000-57873600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:57870400-57874800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:57870400-57874800	Enhancers	Fetal Brain Male	brain
11	chr1:57871000-57887600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:57871400-57873600	Weak transcription	Stomach Mucosa	stomach
13	chr1:57872800-57873000	Weak transcription	Fetal Brain Female	brain
14	chr1:57872800-57873200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:57872800-57873200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:57872800-57873400	Enhancers	Fetal Stomach	stomach
17	chr1:57872800-57873800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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