Variant report

Variant	rs17115871
Chromosome Location	chr1:57955433-57955434
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17115862	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs17115863	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115864	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs17115867	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115882	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57951998	1.00[ASN][1000 genomes]
rs59727725	1.00[ASN][1000 genomes]
rs72911217	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57954600-57955800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:57954600-57955800	Enhancers	HSMM	muscle
3	chr1:57954600-57955800	Enhancers	NHEK	skin
4	chr1:57954600-57956000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:57954600-57956000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:57954600-57956000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:57954600-57956000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:57954600-57956000	Enhancers	Hela-S3	cervix
9	chr1:57954600-57956000	Enhancers	NHLF	lung
10	chr1:57954600-57956200	Enhancers	NHDF-Ad	bronchial
11	chr1:57954800-57955800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr1:57954800-57955800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:57954800-57955800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:57954800-57956000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:57954800-57956000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:57954800-57956000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:57954800-57956000	Enhancers	NH-A	brain
18	chr1:57954800-57956000	Enhancers	Osteobl	bone
19	chr1:57955000-57955600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:57955000-57955600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:57955000-57955600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr1:57955000-57955800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr1:57955000-57955800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:57955000-57955800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:57955000-57955800	Enhancers	HSMMtube	muscle
26	chr1:57955000-57955800	Enhancers	HUVEC	blood vessel
27	chr1:57955000-57956000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:57955000-57956000	Enhancers	HMEC	breast
29	chr1:57955200-57955600	Enhancers	Placenta Amnion	Placenta Amnion
30	chr1:57955200-57955800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr1:57955200-57955800	Enhancers	Stomach Mucosa	stomach
32	chr1:57955200-57956000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr1:57955200-57956000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr1:57955200-57972800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr1:57955400-57955600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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