Variant report

Variant	rs17116304
Chromosome Location	chr5:154027020-154027021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154026316..154028892-chr5:154135957..154138460,3	K562	blood:
2	chr5:154023772..154028436-chr5:154235894..154238636,6	K562	blood:
3	chr5:154025658..154027671-chr5:154029941..154032598,2	K562	blood:
4	chr5:154026946..154029914-chr5:154142078..154144700,2	K562	blood:
5	chr5:154025141..154035158-chr5:154131407..154139853,27	K562	blood:
6	chr5:154024346..154028436-chr5:154236523..154238636,3	K562	blood:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17560103	1.00[ASN][1000 genomes]
rs6877721	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401644	chr5:153898681-154058368	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154026200-154027400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
2	chr5:154026200-154027400	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr5:154026200-154027400	Flanking Bivalent TSS/Enh	Thymus	Thymus
4	chr5:154026200-154027600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
5	chr5:154026200-154027800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:154026400-154027200	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
7	chr5:154026400-154027200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr5:154026400-154027200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr5:154026400-154027200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
10	chr5:154026400-154027200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
11	chr5:154026400-154027200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
12	chr5:154026400-154027200	Flanking Active TSS	NH-A	brain
13	chr5:154026400-154027400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr5:154026400-154027400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr5:154026400-154027400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
16	chr5:154026400-154027400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
17	chr5:154026400-154027400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
18	chr5:154026400-154027400	Bivalent/Poised TSS	Fetal Brain Female	brain
19	chr5:154026400-154027400	Flanking Active TSS	Fetal Intestine Small	intestine
20	chr5:154026400-154027400	Active TSS	Rectal Smooth Muscle	rectum
21	chr5:154026400-154027400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
22	chr5:154026400-154027600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:154026400-154027600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:154026400-154027600	Enhancers	Spleen	Spleen
25	chr5:154026400-154027800	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr5:154026600-154027200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr5:154026600-154027200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr5:154026600-154027200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr5:154026600-154027200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:154026600-154027200	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr5:154026600-154027200	Active TSS	Aorta	Aorta
32	chr5:154026600-154027200	Bivalent/Poised TSS	Fetal Kidney	kidney
33	chr5:154026600-154027200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
34	chr5:154026600-154027400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:154026600-154027400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
36	chr5:154026600-154027400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr5:154026600-154027400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
38	chr5:154026600-154027400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
39	chr5:154026600-154027400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
40	chr5:154026600-154027400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
41	chr5:154026600-154027400	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr5:154026600-154027400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
43	chr5:154026600-154027400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:154026600-154027400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:154026600-154027400	Flanking Active TSS	Liver	Liver
46	chr5:154026600-154027400	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr5:154026600-154027400	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr5:154026600-154027400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
49	chr5:154026600-154027400	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr5:154026600-154027400	Flanking Active TSS	Fetal Intestine Large	intestine

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