Variant report

Variant	rs17116316
Chromosome Location	chr5:154034205-154034206
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:154029092..154031535-chr5:154031652..154034551,2	K562	blood:
2	chr5:154034090..154035820-chr5:154141862..154143840,2	K562	blood:
3	chr5:154032924..154035953-chr5:154060890..154064401,4	K562	blood:
4	chr5:154034077..154035807-chr5:154037417..154039966,2	K562	blood:
5	chr5:154032750..154034923-chr5:154157447..154159549,2	K562	blood:
6	chr5:154029914..154035402-chr5:154132674..154138757,12	K562	blood:
7	chr5:154032204..154034670-chr5:154258482..154261349,2	MCF-7	breast:
8	chr5:154032959..154035476-chr5:154316214..154318624,2	MCF-7	breast:
9	chr5:154033358..154036952-chr5:154037115..154039646,4	K562	blood:
10	chr5:154025141..154035158-chr5:154131407..154139853,27	K562	blood:
11	chr5:154028334..154034938-chr5:154133035..154137591,9	MCF-7	breast:
12	chr5:154031990..154035477-chr5:154237089..154239415,3	K562	blood:
13	chr5:154033389..154035257-chr5:154121200..154122760,2	K562	blood:
14	chr5:154032586..154035890-chr5:154134130..154138220,4	MCF-7	breast:
15	chr5:154032703..154035820-chr5:154141862..154144774,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction
ENSG00000170271	Chromatin interaction
ENSG00000082516	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11167702	1.00[CHB][hapmap]
rs17641488	1.00[CHB][hapmap]
rs1962633	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3867430	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401644	chr5:153898681-154058368	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154027400-154034600	Weak transcription	Lung	lung
2	chr5:154032200-154034800	Enhancers	Pancreas	Pancrea
3	chr5:154032400-154034400	Enhancers	Fetal Intestine Small	intestine
4	chr5:154032400-154034600	Enhancers	Adipose Nuclei	Adipose
5	chr5:154032400-154034800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:154032400-154034800	Enhancers	Fetal Intestine Large	intestine
7	chr5:154032600-154034800	Enhancers	HMEC	breast
8	chr5:154032800-154035000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:154032800-154035000	Enhancers	Fetal Stomach	stomach
10	chr5:154032800-154035000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr5:154033200-154034600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr5:154033200-154035000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:154033200-154035000	Enhancers	Primary B cells from peripheral blood	blood
14	chr5:154033200-154035000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:154033200-154035000	Enhancers	GM12878-XiMat	blood
16	chr5:154033200-154035200	Enhancers	Fetal Muscle Leg	muscle
17	chr5:154033400-154034400	Weak transcription	A549	lung
18	chr5:154033400-154034600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:154033400-154034800	Enhancers	Fetal Lung	lung
20	chr5:154033400-154035200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr5:154033400-154035200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:154033600-154034600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:154033600-154034600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:154033600-154034800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr5:154033600-154034800	Flanking Active TSS	HUVEC	blood vessel
26	chr5:154033600-154035000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:154033600-154035000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:154033600-154035000	Enhancers	HepG2	liver
29	chr5:154033800-154034400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr5:154033800-154034600	Active TSS	Stomach Smooth Muscle	stomach
31	chr5:154033800-154034600	Weak transcription	Spleen	Spleen
32	chr5:154033800-154034800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr5:154033800-154034800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr5:154033800-154034800	Enhancers	Liver	Liver
35	chr5:154033800-154034800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr5:154033800-154034800	Weak transcription	Fetal Thymus	thymus
37	chr5:154033800-154035000	Flanking Active TSS	K562	blood
38	chr5:154034000-154034400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:154034000-154034400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr5:154034000-154034400	Weak transcription	Placenta	Placenta
41	chr5:154034000-154034400	Weak transcription	Left Ventricle	heart
42	chr5:154034000-154034400	Weak transcription	Right Ventricle	heart
43	chr5:154034000-154034400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr5:154034000-154034400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr5:154034000-154034600	Weak transcription	Stomach Mucosa	stomach
46	chr5:154034000-154035000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:154034000-154035000	Enhancers	HSMMtube	muscle
48	chr5:154034200-154034400	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr5:154034200-154034400	Enhancers	Duodenum Mucosa	Duodenum
50	chr5:154034200-154034400	Enhancers	HSMM	muscle

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