Variant report

Variant	rs17116458
Chromosome Location	chr1:97602384-97602385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17470762	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs56412088	0.84[AFR][1000 genomes]
rs56822709	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6663838	1.00[GIH][hapmap]
rs6667364	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs6668057	1.00[CEU][hapmap]
rs6680642	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830692	chr1:97501492-97625153	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97538000-97603600	Weak transcription	Psoas Muscle	Psoas
2	chr1:97560800-97603600	Weak transcription	Pancreas	Pancrea
3	chr1:97563600-97619200	Weak transcription	Dnd41	blood
4	chr1:97564200-97632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:97565400-97603600	Weak transcription	Left Ventricle	heart
6	chr1:97570600-97603800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:97571200-97604000	Weak transcription	Primary B cells from cord blood	blood
8	chr1:97580800-97604400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:97585600-97621800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:97587600-97603400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:97587800-97603800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:97590000-97603600	Weak transcription	HSMM	muscle
13	chr1:97590000-97603600	Weak transcription	HSMMtube	muscle
14	chr1:97590200-97603800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:97590400-97603600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:97592200-97608800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:97594400-97605600	Weak transcription	Lung	lung
18	chr1:97594800-97603400	Weak transcription	Fetal Brain Male	brain
19	chr1:97595400-97603400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:97597400-97603800	Weak transcription	Adipose Nuclei	Adipose
21	chr1:97597400-97619600	Weak transcription	Liver	Liver
22	chr1:97597600-97603800	Weak transcription	Primary T cells from cord blood	blood
23	chr1:97597800-97604000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:97599200-97603800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:97601800-97604000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr1:97601800-97604600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:97602000-97603400	Weak transcription	Brain Substantia Nigra	brain
28	chr1:97602000-97604600	Enhancers	Brain Angular Gyrus	brain
29	chr1:97602200-97602600	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:97602200-97603400	Weak transcription	Colon Smooth Muscle	Colon

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