Variant report

Variant	rs17116488
Chromosome Location	chr1:97617935-97617936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11165810	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs12120388	0.84[ASN][1000 genomes]
rs12564297	0.88[MEX][hapmap]
rs12735722	0.88[MEX][hapmap]
rs13376487	0.86[ASN][1000 genomes]
rs17116518	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs17116594	0.94[JPT][hapmap];1.00[MEX][hapmap]
rs4128473	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4412640	0.89[JPT][hapmap]
rs4950025	0.88[MEX][hapmap]
rs57893648	0.88[ASN][1000 genomes]
rs58951949	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61240803	0.89[ASN][1000 genomes]
rs6656660	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs676686	0.89[JPT][hapmap]
rs7528631	1.00[CEU][hapmap]
rs7529372	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830692	chr1:97501492-97625153	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97563600-97619200	Weak transcription	Dnd41	blood
2	chr1:97564200-97632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:97585600-97621800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:97597400-97619600	Weak transcription	Liver	Liver
5	chr1:97604000-97620000	Weak transcription	Pancreas	Pancrea
6	chr1:97604400-97629000	Weak transcription	Primary B cells from cord blood	blood
7	chr1:97606200-97626600	Weak transcription	Ovary	ovary
8	chr1:97609200-97627800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:97611600-97639600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:97612200-97626600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:97613200-97629000	Weak transcription	Primary T cells from cord blood	blood
12	chr1:97616000-97620000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:97617400-97625400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr1:97617600-97618000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:97617800-97625000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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