Variant report

Variant	rs17116873
Chromosome Location	chr14:82976258-82976259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs8181991	0.96[AFR][1000 genomes]
rs8181998	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1051581	chr14:82829319-83051904	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv832842	chr14:82871181-83054768	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1053265	chr14:82936138-82983060	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv2521557	chr14:82974907-82976472	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82976000-82976400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr14:82976000-82976800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:82976200-82976600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr14:82976200-82976800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:82976200-82977400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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